IL_7ZPQ_189

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_189 not in the Motif Atlas

Homologous match to IL_8C3A_093

Geometric discrepancy: 0.072

The information below is about IL_8C3A_093

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7ZPQ|1|5|U|2211
7ZPQ|1|5|C|2212
7ZPQ|1|5|A|2213
7ZPQ|1|5|A|2214
7ZPQ|1|5|A|2215
7ZPQ|1|5|G|2216
7ZPQ|1|5|U|2217
*
7ZPQ|1|5|A|2228
7ZPQ|1|5|A|2229
7ZPQ|1|5|C|2230
7ZPQ|1|5|C|2231
7ZPQ|1|5|A|2232
7ZPQ|1|5|A|2233
7ZPQ|1|5|G|2234

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain Bh

60S ribosomal protein L36-A