IL_7ZPQ_209

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

7ZPQ|1|5|G|2945, 7ZPQ|1|5|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_209 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0536

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

7ZPQ|1|5|C|2879
7ZPQ|1|5|U|2880
7ZPQ|1|5|C|2881
*
7ZPQ|1|5|G|2943
7ZPQ|1|5|U|2944
7ZPQ|1|5|G|2945
7ZPQ|1|5|A|2946
7ZPQ|1|5|G|2947

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BU

60S ribosomal protein L23-A