IL_7ZPQ_215

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7ZPQ|1|5|A|3142, 7ZPQ|1|5|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_215 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.0796

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7ZPQ|1|5|C|3004
7ZPQ|1|5|A|3005
7ZPQ|1|5|A|3006
7ZPQ|1|5|U|3007
*
7ZPQ|1|5|A|3139
7ZPQ|1|5|G|3140
7ZPQ|1|5|A|3141
7ZPQ|1|5|A|3142
7ZPQ|1|5|C|3143
7ZPQ|1|5|G|3144

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BN

60S ribosomal protein L16-A