IL_7ZPQ_219

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

7ZPQ|1|5|U|3056, 7ZPQ|1|5|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_219 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.0706

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

7ZPQ|1|5|U|3054
7ZPQ|1|5|U|3055
7ZPQ|1|5|U|3056
7ZPQ|1|5|U|3057
7ZPQ|1|5|U|3058
7ZPQ|1|5|G|3059
*
7ZPQ|1|5|C|3084
7ZPQ|1|5|G|3085
7ZPQ|1|5|A|3086
7ZPQ|1|5|A|3087
7ZPQ|1|5|G|3088

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L3

Chain BV

RPL24A isoform 1

Chain Bc

60S ribosomal protein L31-A