IL_7ZPQ_236

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_236 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.1032

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7ZPQ|1|5|A|3342
7ZPQ|1|5|G|3343
7ZPQ|1|5|A|3344
7ZPQ|1|5|G|3345
*
7ZPQ|1|5|C|3360
7ZPQ|1|5|G|3361
7ZPQ|1|5|A|3362
7ZPQ|1|5|U|3363

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S8

Chain BQ

60S ribosomal protein L19-A