IL_7ZPQ_237

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

7ZPQ|1|5|U|3354, 7ZPQ|1|5|U|3355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_237 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.3575

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

7ZPQ|1|5|C|3349
7ZPQ|1|5|C|3350
*
7ZPQ|1|5|G|3353
7ZPQ|1|5|U|3354
7ZPQ|1|5|U|3355
7ZPQ|1|5|G|3356

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S8