IL_7ZPQ_238

3D structure

PDB id

7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.47 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZPQ_238 not in the Motif Atlas

Geometric match to IL_4J50_003

Geometric discrepancy: 0.1689

The information below is about IL_4J50_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

7ZPQ|1|2|U|822
7ZPQ|1|2|G|823
7ZPQ|1|2|G|824
*
7ZPQ|1|2|C|848
7ZPQ|1|2|C|849
7ZPQ|1|2|A|850

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AL

40S ribosomal protein S11-A

Chain BQ

60S ribosomal protein L19-A