IL_7ZPQ_239
3D structure
- PDB id
- 7ZPQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the RQT-bound 80S ribosome from S. cerevisiae (C1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.47 Å
Loop
- Sequence
- GAC*GUUU
- Length
- 7 nucleotides
- Bulged bases
- 7ZPQ|1|2|U|959
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ZPQ_239 not in the Motif Atlas
- Homologous match to IL_8C3A_510
- Geometric discrepancy: 0.0975
- The information below is about IL_8C3A_510
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.3
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 49
Unit IDs
7ZPQ|1|2|G|868
7ZPQ|1|2|A|869
7ZPQ|1|2|C|870
*
7ZPQ|1|2|G|957
7ZPQ|1|2|U|958
7ZPQ|1|2|U|959
7ZPQ|1|2|U|960
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AN
- 40S ribosomal protein S13
- Chain Ab
- 40S ribosomal protein S27-A
Coloring options: