3D structure

PDB id
7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S E. coli ribosome with truncated uL23 and uL24 loops
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
GUAAG*CGUUAUAAC
Length
14 nucleotides
Bulged bases
7ZQ5|1|b|U|102
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZQ5_009 not in the Motif Atlas
Homologous match to IL_8VTW_004
Geometric discrepancy: 0.5931
The information below is about IL_8VTW_004
Detailed Annotation
Kink-turn
Broad Annotation
Kink-turn
Motif group
IL_45067.5
Basepair signature
cWW-tSH-tSS-tHS-R-cWW-cWW-R
Number of instances in this motif group
16

Unit IDs

7ZQ5|1|b|G|81
7ZQ5|1|b|U|82
7ZQ5|1|b|A|83
7ZQ5|1|b|A|84
7ZQ5|1|b|G|85
*
7ZQ5|1|b|C|97
7ZQ5|1|b|G|98
7ZQ5|1|b|U|99
7ZQ5|1|b|U|100
7ZQ5|1|b|A|101
7ZQ5|1|b|U|102
7ZQ5|1|b|A|103
7ZQ5|1|b|A|104
7ZQ5|1|b|C|105

Current chains

Chain b
23S rRNA

Nearby chains

Chain 1
50S ribosomal protein L29
Chain u
50S ribosomal protein L24

Coloring options:


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