IL_7ZQ5_012

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ5_012 not in the Motif Atlas

Geometric match to IL_5J7L_251

Geometric discrepancy: 0.0754

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7ZQ5|1|b|C|239
7ZQ5|1|b|C|240
7ZQ5|1|b|A|241
7ZQ5|1|b|G|242
7ZQ5|1|b|U|243
7ZQ5|1|b|A|244
7ZQ5|1|b|G|245
*
7ZQ5|1|b|C|253
7ZQ5|1|b|G|254
7ZQ5|1|b|A|255
7ZQ5|1|b|A|256
7ZQ5|1|b|C|257
7ZQ5|1|b|G|258

Current chains

Chain b

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain l

50S ribosomal protein L15