IL_7ZQ5_031

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ5_031 not in the Motif Atlas

Geometric match to IL_5J7L_272

Geometric discrepancy: 0.0895

The information below is about IL_5J7L_272

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

7ZQ5|1|b|G|864
7ZQ5|1|b|C|865
7ZQ5|1|b|A|866
7ZQ5|1|b|C|867
7ZQ5|1|b|U|868
*
7ZQ5|1|b|A|909
7ZQ5|1|b|A|910
7ZQ5|1|b|A|911
7ZQ5|1|b|C|912

Current chains

Chain b

23S rRNA

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16