IL_7ZQ5_037

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ5_037 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.083

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7ZQ5|1|b|U|1004
7ZQ5|1|b|C|1005
7ZQ5|1|b|C|1006
7ZQ5|1|b|C|1007
7ZQ5|1|b|A|1008
7ZQ5|1|b|A|1009
7ZQ5|1|b|A|1010
7ZQ5|1|b|G|1011
*
7ZQ5|1|b|C|1150
7ZQ5|1|b|A|1151

Current chains

Chain b

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20