3D structure

PDB id
7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S E. coli ribosome with truncated uL23 and uL24 loops
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
UCCCAAAG*CA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZQ5_037 not in the Motif Atlas
Geometric match to IL_5J7L_278
Geometric discrepancy: 0.083
The information below is about IL_5J7L_278
Detailed Annotation
SSU/LSU pseudoknot
Broad Annotation
No text annotation
Motif group
IL_41203.4
Basepair signature
cWW-L-cWW-L-L-R-cSH
Number of instances in this motif group
11

Unit IDs

7ZQ5|1|b|U|1004
7ZQ5|1|b|C|1005
7ZQ5|1|b|C|1006
7ZQ5|1|b|C|1007
7ZQ5|1|b|A|1008
7ZQ5|1|b|A|1009
7ZQ5|1|b|A|1010
7ZQ5|1|b|G|1011
*
7ZQ5|1|b|C|1150
7ZQ5|1|b|A|1151

Current chains

Chain b
23S rRNA

Nearby chains

Chain j
50S ribosomal protein L13
Chain q
50S ribosomal protein L20

Coloring options:


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