IL_7ZQ5_100

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ5_100 not in the Motif Atlas

Geometric match to IL_7RQB_103

Geometric discrepancy: 0.1235

The information below is about IL_7RQB_103

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.1

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

7ZQ5|1|b|C|2652
7ZQ5|1|b|U|2653
7ZQ5|1|b|A|2654
7ZQ5|1|b|G|2655
7ZQ5|1|b|U|2656
7ZQ5|1|b|A|2657
7ZQ5|1|b|C|2658
*
7ZQ5|1|b|G|2663
7ZQ5|1|b|G|2664
7ZQ5|1|b|A|2665
7ZQ5|1|b|C|2666
7ZQ5|1|b|C|2667
7ZQ5|1|b|G|2668

Current chains

Chain b

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6