IL_7ZQ5_111

3D structure

PDB id

7ZQ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ5_111 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0592

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

7ZQ5|1|b|G|1666
7ZQ5|1|b|G|1667
7ZQ5|1|b|A|1668
7ZQ5|1|b|A|1669
7ZQ5|1|b|C|1670
7ZQ5|1|b|U|1671
7ZQ5|1|b|A|1672
7ZQ5|1|b|G|1673
7ZQ5|1|b|G|1674
*
7ZQ5|1|b|C|1990
7ZQ5|1|b|U|1991
7ZQ5|1|b|G|1992
7ZQ5|1|b|U|1993
7ZQ5|1|b|C|1994

Current chains

Chain b

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain k

50S ribosomal protein L14