IL_7ZQ6_021

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7ZQ6|1|b|G|801, 7ZQ6|1|b|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ6_021 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0698

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7ZQ6|1|b|G|674
7ZQ6|1|b|A|675
7ZQ6|1|b|A|676
7ZQ6|1|b|A|677
7ZQ6|1|b|C|678
*
7ZQ6|1|b|G|799
7ZQ6|1|b|A|800
7ZQ6|1|b|G|801
7ZQ6|1|b|A|802
7ZQ6|1|b|U|803
7ZQ6|1|b|A|804
7ZQ6|1|b|G|805
7ZQ6|1|b|C|806

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain l

50S ribosomal protein L15