IL_7ZQ6_111

3D structure

PDB id

7ZQ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S E. coli ribosome with truncated uL23 and uL24 loops and a stalled filamin domain 5 nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZQ6_111 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0952

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7ZQ6|1|b|U|1851
7ZQ6|1|b|U|1852
7ZQ6|1|b|A|1853
7ZQ6|1|b|A|1854
7ZQ6|1|b|U|1855
7ZQ6|1|b|U|1856
7ZQ6|1|b|G|1857
7ZQ6|1|b|A|1858
7ZQ6|1|b|U|1859
7ZQ6|1|b|G|1860
*
7ZQ6|1|b|U|1882
7ZQ6|1|b|U|1883
7ZQ6|1|b|G|1884
7ZQ6|1|b|A|1885
7ZQ6|1|b|U|1886
7ZQ6|1|b|C|1887
7ZQ6|1|b|G|1888
7ZQ6|1|b|A|1889
7ZQ6|1|b|A|1890
7ZQ6|1|b|G|1891

Current chains

Chain b

23S rRNA

Nearby chains