IL_7ZRS_019

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

7ZRS|1|2|U|313, 7ZRS|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_019 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.0863

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7ZRS|1|2|U|311
7ZRS|1|2|A|312
7ZRS|1|2|U|313
7ZRS|1|2|C|314
7ZRS|1|2|A|315
7ZRS|1|2|A|316
*
7ZRS|1|2|U|348
7ZRS|1|2|U|349
7ZRS|1|2|U|350
7ZRS|1|2|C|351
7ZRS|1|2|A|352
7ZRS|1|2|A|353
7ZRS|1|2|C|354
7ZRS|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S8-A

Chain AL

40S ribosomal protein S11-A

Chain AX

40S ribosomal protein S23-A