IL_7ZRS_034

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

7ZRS|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_034 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.112

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

7ZRS|1|2|G|616
7ZRS|1|2|U|617
7ZRS|1|2|U|618
7ZRS|1|2|A|619
7ZRS|1|2|A|620
7ZRS|1|2|A|621
7ZRS|1|2|A|622
*
7ZRS|1|2|U|1104
7ZRS|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AX

40S ribosomal protein S23-A

Chain Aa

RPS26B isoform 1