IL_7ZRS_215

3D structure

PDB id

7ZRS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the RQT-bound 80S ribosome from S. cerevisiae (C2) - composite map

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7ZRS|1|5|A|3143, 7ZRS|1|5|C|3144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZRS_215 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0721

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7ZRS|1|5|C|3005
7ZRS|1|5|A|3006
7ZRS|1|5|A|3007
7ZRS|1|5|U|3008
*
7ZRS|1|5|A|3140
7ZRS|1|5|G|3141
7ZRS|1|5|A|3142
7ZRS|1|5|A|3143
7ZRS|1|5|C|3144
7ZRS|1|5|G|3145

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain BB

60S ribosomal protein L3

Chain BN

60S ribosomal protein L16-A