IL_7ZTA_017

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7ZTA|1|16S1|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_017 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1411

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7ZTA|1|16S1|G|147
7ZTA|1|16S1|G|148
7ZTA|1|16S1|A|149
7ZTA|1|16S1|U|150
7ZTA|1|16S1|A|151
7ZTA|1|16S1|A|152
7ZTA|1|16S1|C|153
*
7ZTA|1|16S1|G|168
7ZTA|1|16S1|C|169
7ZTA|1|16S1|U|170
7ZTA|1|16S1|A|171
7ZTA|1|16S1|A|172
7ZTA|1|16S1|U|173
7ZTA|1|16S1|A|174
7ZTA|1|16S1|C|175

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S201

30S ribosomal protein S20