IL_7ZTA_029

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_029 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.1093

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7ZTA|1|16S1|C|504
7ZTA|1|16S1|G|505
7ZTA|1|16S1|G|506
7ZTA|1|16S1|C|507
7ZTA|1|16S1|U|508
7ZTA|1|16S1|A|509
7ZTA|1|16S1|A|510
7ZTA|1|16S1|C|511
*
7ZTA|1|16S1|G|540
7ZTA|1|16S1|G|541

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S041

30S ribosomal protein S4

Chain S121

30S ribosomal protein S12