IL_7ZTA_038

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

7ZTA|1|16S1|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_038 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.0938

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7ZTA|1|16S1|U|662
7ZTA|1|16S1|A|663
7ZTA|1|16S1|G|664
7ZTA|1|16S1|A|665
7ZTA|1|16S1|G|666
*
7ZTA|1|16S1|U|740
7ZTA|1|16S1|G|741
7ZTA|1|16S1|G|742
7ZTA|1|16S1|A|743

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S061

30S ribosomal protein S6, fully modified isoform

Chain S151

30S ribosomal protein S15

Chain S181

30S ribosomal protein S18