IL_7ZTA_043

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_043 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0822

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7ZTA|1|16S1|G|887
7ZTA|1|16S1|G|888
7ZTA|1|16S1|A|889
7ZTA|1|16S1|G|890
7ZTA|1|16S1|U|891
7ZTA|1|16S1|A|892
7ZTA|1|16S1|C|893
7ZTA|1|16S1|G|894
*
7ZTA|1|16S1|U|905
7ZTA|1|16S1|A|906
7ZTA|1|16S1|A|907
7ZTA|1|16S1|A|908
7ZTA|1|16S1|A|909
7ZTA|1|16S1|C|910

Current chains

Chain 16S1

16S ribosomal RNA

Nearby chains

Chain S121

30S ribosomal protein S12