IL_7ZTA_077

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_077 not in the Motif Atlas

Homologous match to IL_5J7L_251

Geometric discrepancy: 0.0722

The information below is about IL_5J7L_251

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_26307.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7ZTA|1|23S1|C|239
7ZTA|1|23S1|C|240
7ZTA|1|23S1|A|241
7ZTA|1|23S1|G|242
7ZTA|1|23S1|U|243
7ZTA|1|23S1|A|244
7ZTA|1|23S1|G|245
*
7ZTA|1|23S1|C|253
7ZTA|1|23S1|G|254
7ZTA|1|23S1|A|255
7ZTA|1|23S1|A|256
7ZTA|1|23S1|C|257
7ZTA|1|23S1|G|258

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L151

50S ribosomal protein L15

Chain L351

50S ribosomal protein L35