IL_7ZTA_086

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7ZTA|1|23S1|G|801, 7ZTA|1|23S1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_086 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.077

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7ZTA|1|23S1|G|674
7ZTA|1|23S1|A|675
7ZTA|1|23S1|A|676
7ZTA|1|23S1|A|677
7ZTA|1|23S1|C|678
*
7ZTA|1|23S1|G|799
7ZTA|1|23S1|A|800
7ZTA|1|23S1|G|801
7ZTA|1|23S1|A|802
7ZTA|1|23S1|U|803
7ZTA|1|23S1|A|804
7ZTA|1|23S1|G|805
7ZTA|1|23S1|C|806

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain L041

50S ribosomal protein L4

Chain L151

50S ribosomal protein L15