IL_7ZTA_156

3D structure

PDB id

7ZTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an Escherichia coli 70S ribosome stalled by Tetracenomycin X during translation of an MAAAPQK(C) peptide

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAG*CGACCUUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZTA_156 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.0673

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

7ZTA|1|23S1|G|2124
7ZTA|1|23S1|G|2125
7ZTA|1|23S1|A|2126
7ZTA|1|23S1|G|2127
*
7ZTA|1|23S1|C|2161
7ZTA|1|23S1|G|2162
7ZTA|1|23S1|A|2163
7ZTA|1|23S1|C|2164
7ZTA|1|23S1|C|2165
7ZTA|1|23S1|U|2166
7ZTA|1|23S1|U|2167
7ZTA|1|23S1|G|2168
7ZTA|1|23S1|A|2169
7ZTA|1|23S1|A|2170
7ZTA|1|23S1|A|2171
7ZTA|1|23S1|U|2172
7ZTA|1|23S1|A|2173
7ZTA|1|23S1|C|2174

Current chains

Chain 23S1

23S ribosomal RNA

Nearby chains

Chain ETR1

Transfer RNA; tRNA