IL_7ZUW_003

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

7ZUW|1|2|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_003 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.1456

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

7ZUW|1|2|U|37
7ZUW|1|2|C|38
7ZUW|1|2|A|39
7ZUW|1|2|A|40
7ZUW|1|2|A|41
*
7ZUW|1|2|U|466
7ZUW|1|2|G|467
7ZUW|1|2|A|468
7ZUW|1|2|C|469
7ZUW|1|2|A|470
7ZUW|1|2|A|471

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4-A

Chain AJ

40S ribosomal protein S9-A

Chain AY

40S ribosomal protein S24-A