IL_7ZUW_030

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_030 not in the Motif Atlas

Geometric match to IL_6CZR_132

Geometric discrepancy: 0.2161

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

7ZUW|1|2|A|550
7ZUW|1|2|G|551
7ZUW|1|2|G|552
7ZUW|1|2|G|553
7ZUW|1|2|C|554
7ZUW|1|2|A|555
7ZUW|1|2|A|556
7ZUW|1|2|G|557
*
7ZUW|1|2|C|587
7ZUW|1|2|U|588

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AC

RPS2 isoform 1

Chain AJ

40S ribosomal protein S9-A

Chain Ae

40S ribosomal protein S30-A