IL_7ZUW_052

3D structure

PDB id

7ZUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RQT (C1) bound to the stalled ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUW_052 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1013

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

7ZUW|1|2|G|1111
7ZUW|1|2|G|1112
7ZUW|1|2|A|1113
7ZUW|1|2|G|1114
7ZUW|1|2|U|1115
7ZUW|1|2|A|1116
7ZUW|1|2|U|1117
7ZUW|1|2|G|1118
*
7ZUW|1|2|U|1129
7ZUW|1|2|G|1130
7ZUW|1|2|A|1131
7ZUW|1|2|A|1132
7ZUW|1|2|A|1133
7ZUW|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain AX

40S ribosomal protein S23-A

Chain Bm

60S ribosomal protein L41