IL_7ZUX_167

3D structure

PDB id

7ZUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Collided ribosome in a disome unit from S. cerevisiae

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GA*UGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZUX_167 not in the Motif Atlas

Geometric match to IL_5VSU_003

Geometric discrepancy: 0.3566

The information below is about IL_5VSU_003

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

48

Unit IDs

7ZUX|1|5|G|1566
7ZUX|1|5|A|1567
*
7ZUX|1|5|U|1573
7ZUX|1|5|G|1574
7ZUX|1|5|C|1575

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA

Chain EW

60S ribosomal protein L25