IL_7ZW0_019

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

7ZW0|1|2|U|313, 7ZW0|1|2|C|351

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_019 not in the Motif Atlas

Geometric match to IL_4V88_402

Geometric discrepancy: 0.0605

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

7ZW0|1|2|U|311
7ZW0|1|2|A|312
7ZW0|1|2|U|313
7ZW0|1|2|C|314
7ZW0|1|2|A|315
7ZW0|1|2|A|316
*
7ZW0|1|2|U|348
7ZW0|1|2|U|349
7ZW0|1|2|U|350
7ZW0|1|2|C|351
7ZW0|1|2|A|352
7ZW0|1|2|A|353
7ZW0|1|2|C|354
7ZW0|1|2|G|355

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sV

40S ribosomal protein S8-A

Chain sX

40S ribosomal protein S11-A

Chain sc

40S ribosomal protein S23-A