3D structure

PDB id
7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
FAP-80S Complex - Rotated state
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
UGG*UCUGUGA
Length
10 nucleotides
Bulged bases
7ZW0|1|2|U|1432, 7ZW0|1|2|G|1435
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ZW0_067 not in the Motif Atlas
Geometric match to IL_4V88_451
Geometric discrepancy: 0.0855
The information below is about IL_4V88_451
Detailed Annotation
Minor groove platform with extra cWW
Broad Annotation
Minor groove platform
Motif group
IL_97255.1
Basepair signature
cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

7ZW0|1|2|U|1276
7ZW0|1|2|G|1277
7ZW0|1|2|G|1278
*
7ZW0|1|2|U|1430
7ZW0|1|2|C|1431
7ZW0|1|2|U|1432
7ZW0|1|2|G|1433
7ZW0|1|2|U|1434
7ZW0|1|2|G|1435
7ZW0|1|2|A|1436

Current chains

Chain 2
18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sA
40S ribosomal protein S3
Chain sC
40S ribosomal protein S10-A
Chain sJ
40S ribosomal protein S20
Chain sM
RPS29A isoform 1

Coloring options:


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