IL_7ZW0_152

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_152 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0666

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7ZW0|1|LA|G|1444
7ZW0|1|LA|U|1445
7ZW0|1|LA|A|1446
7ZW0|1|LA|G|1447
7ZW0|1|LA|U|1448
7ZW0|1|LA|A|1449
7ZW0|1|LA|G|1450
*
7ZW0|1|LA|C|2354
7ZW0|1|LA|G|2355
7ZW0|1|LA|A|2356
7ZW0|1|LA|A|2357
7ZW0|1|LA|A|2358
7ZW0|1|LA|C|2359

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LD

5.8S ribosomal RNA; 5.8S rRNA

Chain LG

60S ribosomal protein L4-A

Chain LS

60S ribosomal protein L17-A