IL_7ZW0_174

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

7ZW0|1|LA|U|2159, 7ZW0|1|LA|U|2175, 7ZW0|1|LA|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_174 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.0766

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7ZW0|1|LA|C|2156
7ZW0|1|LA|G|2157
7ZW0|1|LA|A|2158
7ZW0|1|LA|U|2159
7ZW0|1|LA|G|2160
7ZW0|1|LA|G|2161
*
7ZW0|1|LA|U|2173
7ZW0|1|LA|G|2174
7ZW0|1|LA|U|2175
7ZW0|1|LA|U|2176
7ZW0|1|LA|G|2177
7ZW0|1|LA|A|2178
7ZW0|1|LA|C|2179
7ZW0|1|LA|G|2180

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain LE

60S ribosomal protein L2-A

Chain Ls

60S ribosomal protein L43-A