IL_7ZW0_206

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

7ZW0|1|LA|A|3142, 7ZW0|1|LA|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_206 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.0704

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7ZW0|1|LA|C|3004
7ZW0|1|LA|A|3005
7ZW0|1|LA|A|3006
7ZW0|1|LA|U|3007
*
7ZW0|1|LA|A|3139
7ZW0|1|LA|G|3140
7ZW0|1|LA|A|3141
7ZW0|1|LA|A|3142
7ZW0|1|LA|C|3143
7ZW0|1|LA|G|3144

Current chains

Chain LA

25S ribosomal RNA (RDN25-1)

Nearby chains

Chain LF

60S ribosomal protein L3

Chain LR

60S ribosomal protein L16-A