IL_7ZW0_243

3D structure

PDB id

7ZW0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

FAP-80S Complex - Rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGCAUGG*UCUGUGAUG

Length

16 nucleotides

Bulged bases

7ZW0|1|2|C|1274, 7ZW0|1|2|U|1432, 7ZW0|1|2|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ZW0_243 not in the Motif Atlas

Homologous match to IL_8P9A_439

Geometric discrepancy: 0.0802

The information below is about IL_8P9A_439

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86012.1

Basepair signature

cWW-tHS-tWH-cWH-cWW-L-L-cWW

Number of instances in this motif group

1

Unit IDs

7ZW0|1|2|U|1272
7ZW0|1|2|G|1273
7ZW0|1|2|C|1274
7ZW0|1|2|A|1275
7ZW0|1|2|U|1276
7ZW0|1|2|G|1277
7ZW0|1|2|G|1278
*
7ZW0|1|2|U|1430
7ZW0|1|2|C|1431
7ZW0|1|2|U|1432
7ZW0|1|2|G|1433
7ZW0|1|2|U|1434
7ZW0|1|2|G|1435
7ZW0|1|2|A|1436
7ZW0|1|2|U|1437
7ZW0|1|2|G|1438

Current chains

Chain 2

18S ribosomal RNA (RDN18-1)

Nearby chains

Chain sA

40S ribosomal protein S3

Chain sC

40S ribosomal protein S10-A

Chain sJ

40S ribosomal protein S20

Chain sM

RPS29A isoform 1

Chain sl

Transfer RNA; tRNA

Chain sm

mRNA