IL_8A3D_005
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_005 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.172
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
8A3D|1|A|C|30
8A3D|1|A|U|31
8A3D|1|A|G|32
8A3D|1|A|A|33
8A3D|1|A|A|34
8A3D|1|A|U|35
8A3D|1|A|U|36
8A3D|1|A|U|37
*
8A3D|1|A|A|44
8A3D|1|A|U|45
8A3D|1|A|U|46
8A3D|1|A|A|47
8A3D|1|A|G|48
8A3D|1|A|U|49
8A3D|1|A|C|50
8A3D|1|A|A|51
8A3D|1|A|G|52
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain U
- 60S ribosomal protein L27a
- Chain d
- 60S ribosomal protein L37
- Chain i
- 60S ribosomal protein L36a
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
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