IL_8A3D_140
3D structure
- PDB id
- 8A3D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mature large subunit of the ribosome with eIF6 and homoharringtonine bound
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.67 Å
Loop
- Sequence
- UGUAU(OMG)U*GCGAAG
- Length
- 13 nucleotides
- Bulged bases
- 8A3D|1|A|U|4634, 8A3D|1|A|U|4636
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A3D_140 not in the Motif Atlas
- Geometric match to IL_3BBM_001
- Geometric discrepancy: 0.3062
- The information below is about IL_3BBM_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_47352.2
- Basepair signature
- cWW-cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 6
Unit IDs
8A3D|1|A|U|4632
8A3D|1|A|G|4633
8A3D|1|A|U|4634
8A3D|1|A|A|4635
8A3D|1|A|U|4636
8A3D|1|A|OMG|4637
8A3D|1|A|U|4638
*
8A3D|1|A|G|4661
8A3D|1|A|C|4662
8A3D|1|A|G|4663
8A3D|1|A|A|4664
8A3D|1|A|A|4665
8A3D|1|A|G|4666
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain Q
- 60S ribosomal protein L24
- Chain X
- 60S ribosomal protein L31
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