IL_8A3L_026

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

AAAG*CUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAAG,CUUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_026 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.1798

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8A3L|1|A|A|459
8A3L|1|A|A|460
8A3L|1|A|A|461
8A3L|1|A|G|462
*
8A3L|1|A|C|470
8A3L|1|A|U|471
8A3L|1|A|U|472
8A3L|1|A|U|473

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16