IL_8A3L_055

3D structure

PDB id

8A3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into the binding of bS1 to the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.42 Å

Loop

Sequence

UUU*AAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UUU,AAA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A3L_055 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.2217

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8A3L|1|A|U|1121
8A3L|1|A|U|1122
8A3L|1|A|U|1123
*
8A3L|1|A|A|1150
8A3L|1|A|A|1151
8A3L|1|A|A|1152

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10