IL_8A57_047
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGGUGAAG*UGGAG
- Length
- 13 nucleotides
- Bulged bases
- 8A57|1|A|U|1256
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A57_047 not in the Motif Atlas
- Geometric match to IL_4V9F_048
- Geometric discrepancy: 0.0791
- The information below is about IL_4V9F_048
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
8A57|1|A|C|1253
8A57|1|A|G|1254
8A57|1|A|G|1255
8A57|1|A|U|1256
8A57|1|A|G|1257
8A57|1|A|A|1258
8A57|1|A|A|1259
8A57|1|A|G|1260
*
8A57|1|A|U|1279
8A57|1|A|G|1280
8A57|1|A|G|1281
8A57|1|A|A|1282
8A57|1|A|G|1283
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain T
- 50S ribosomal protein L20
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