IL_8A57_102
3D structure
- PDB id
- 8A57 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CCGCU*AUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A57_102 not in the Motif Atlas
- Geometric match to IL_5J7L_347
- Geometric discrepancy: 0.0799
- The information below is about IL_5J7L_347
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.11
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 19
Unit IDs
8A57|1|A|C|2713
8A57|1|A|C|2714
8A57|1|A|G|2715
8A57|1|A|C|2716
8A57|1|A|U|2717
*
8A57|1|A|A|2758
8A57|1|A|U|2759
8A57|1|A|G|2760
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
- Chain N
- 50S ribosomal protein L14
- Chain S
- 50S ribosomal protein L19
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