IL_8A5I_016

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_016 not in the Motif Atlas

Geometric match to IL_7RQB_016

Geometric discrepancy: 0.0942

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

8A5I|1|A|U|649
8A5I|1|A|U|650
8A5I|1|A|A|651
8A5I|1|A|A|652
8A5I|1|A|G|653
*
8A5I|1|A|C|663
8A5I|1|A|G|664
8A5I|1|A|G|665
8A5I|1|A|A|666
8A5I|1|A|G|667

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15