IL_8A5I_048

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GUUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_048 not in the Motif Atlas

Geometric match to IL_7RQB_050

Geometric discrepancy: 0.0822

The information below is about IL_7RQB_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8A5I|1|A|G|1354
8A5I|1|A|U|1355
8A5I|1|A|U|1356
8A5I|1|A|U|1357
*
8A5I|1|A|A|1652
8A5I|1|A|C|1653

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23