IL_8A5I_056

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

8A5I|1|A|U|1606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_056 not in the Motif Atlas

Geometric match to IL_7RQB_057

Geometric discrepancy: 0.1696

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

8A5I|1|A|A|1487
8A5I|1|A|U|1488
8A5I|1|A|A|1489
8A5I|1|A|G|1490
*
8A5I|1|A|U|1603
8A5I|1|A|G|1604
8A5I|1|A|A|1605
8A5I|1|A|U|1606
8A5I|1|A|U|1607

Current chains

Chain A

23S ribosomal RNA

Nearby chains