IL_8A5I_073

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_073 not in the Motif Atlas

Geometric match to IL_7RQB_075

Geometric discrepancy: 0.1454

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

8A5I|1|A|A|1889
8A5I|1|A|G|1890
8A5I|1|A|G|1891
8A5I|1|A|A|1892
8A5I|1|A|G|1893
*
8A5I|1|A|C|1915
8A5I|1|A|G|1916
8A5I|1|A|A|1917
8A5I|1|A|A|1918
8A5I|1|A|U|1919

Current chains

Chain A

23S ribosomal RNA

Nearby chains