IL_8A5I_076

3D structure

PDB id

8A5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

8A5I|1|A|A|1971, 8A5I|1|A|U|1977, 8A5I|1|A|C|1996

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8A5I_076 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.092

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.2

Basepair signature

cWW-L-tHH-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

9

Unit IDs

8A5I|1|A|C|1967
8A5I|1|A|G|1968
8A5I|1|A|A|1969
8A5I|1|A|A|1970
8A5I|1|A|A|1971
8A5I|1|A|U|1972
8A5I|1|A|U|1973
8A5I|1|A|C|1974
8A5I|1|A|C|1975
8A5I|1|A|U|1976
8A5I|1|A|U|1977
8A5I|1|A|G|1978
*
8A5I|1|A|C|1994
8A5I|1|A|C|1995
8A5I|1|A|C|1996
8A5I|1|A|G|1997

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L2