IL_8A5I_097
3D structure
- PDB id
- 8A5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUGAG*CAAGAUGAG
- Length
- 14 nucleotides
- Bulged bases
- 8A5I|1|A|G|2813
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8A5I_097 not in the Motif Atlas
- Geometric match to IL_7RQB_102
- Geometric discrepancy: 0.0563
- The information below is about IL_7RQB_102
- Detailed Annotation
- tSH-tHS-tHW
- Broad Annotation
- tSH-tHS-tHW
- Motif group
- IL_04638.1
- Basepair signature
- cWW-tSH-tHW-tHS-cSH-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8A5I|1|A|U|2669
8A5I|1|A|U|2670
8A5I|1|A|G|2671
8A5I|1|A|A|2672
8A5I|1|A|G|2673
*
8A5I|1|A|C|2807
8A5I|1|A|A|2808
8A5I|1|A|A|2809
8A5I|1|A|G|2810
8A5I|1|A|A|2811
8A5I|1|A|U|2812
8A5I|1|A|G|2813
8A5I|1|A|A|2814
8A5I|1|A|G|2815
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain H
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
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