IL_8AGU_043

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_043 not in the Motif Atlas

Geometric match to IL_3TD0_002

Geometric discrepancy: 0.2055

The information below is about IL_3TD0_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8AGU|1|f|U|1014
8AGU|1|f|U|1015
8AGU|1|f|C|1016
8AGU|1|f|C|1017
8AGU|1|f|G|1018
*
8AGU|1|f|U|1034
8AGU|1|f|G|1035
8AGU|1|f|A|1036

Current chains

Chain f

25S rRNA

Nearby chains

Chain r

60S ribosomal protein L10

Chain s

BJ4_G0027750.mRNA.1.CDS.1