IL_8AGU_066

3D structure

PDB id

8AGU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast RQC complex in state E

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

8AGU|1|f|U|1629, 8AGU|1|f|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8AGU_066 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.163

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8AGU|1|f|U|1627
8AGU|1|f|C|1628
8AGU|1|f|U|1629
8AGU|1|f|U|1630
8AGU|1|f|C|1631
*
8AGU|1|f|G|1811
8AGU|1|f|G|1812
8AGU|1|f|A|1813
8AGU|1|f|A|1814
8AGU|1|f|U|1815
8AGU|1|f|A|1816

Current chains

Chain f

25S rRNA

Nearby chains

Chain M

60S ribosomal protein L27-A

Chain d

RPL41A isoform 1